DNA interaction and phosphotransfer of the C4-dicarboxylateresponsive DcuS-DcuR two-component regulatory system from Escherichia coli, J. Bacteriol, vol.186, pp.1879-1889, 2004. ,
Influence of twocomponent signal transduction systems of Lactobacillus casei BL23 on tolerance to stress conditions, Appl. Environ. Microbiol, vol.77, pp.1516-1519, 2011. ,
Quantitative recovery of viable Lactobacillus paracasei CNCM I-1572 (L. casei DG R ) after gastrointestinal passage in healthy adults, Front. Microbiol, vol.9, p.1720, 2018. ,
Enterotypes of the human gut microbiome, Nature, vol.473, pp.174-180, 2011. ,
URL : https://hal.archives-ouvertes.fr/cea-00903625
Antibiotic susceptibility of bacterial isolates from probiotic products available in Italy, Microbial. Ecol. Health Dis, vol.20, pp.199-203, 2008. ,
Functional analysis of the p40 and p75 proteins from Lactobacillus casei BL23, J. Mol. Microbiol. Biotechnol, vol.19, pp.231-241, 2010. ,
Microbial adhesion to solvents: a novel method to determine the electron-donor/electron-accpetor or Lewis acid-base properties of microbial cells, Colloids Surf B Biointerfaces, vol.7, pp.47-53, 1996. ,
Characterization of O-acetylation of N-acetylglucosamine: a novel structural variation of bacterial peptidoglycan, J. Biol. Chem, vol.286, pp.23950-23958, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01004335
Peptidoglycan structure of Lactobacillus casei, a species highly resistant to glycopeptide antibiotics, J. Bacteriol, vol.179, pp.6208-6212, 1997. ,
The essential YycFG two-component system controls cell wall metabolism in Bacillus subtilis, Mol. Microbiol, vol.65, pp.180-200, 2007. ,
Genome sequence and comparative genome analysis of Lactobacillus casei: insights into their niche-associated evolution, Genome Biol. Evol, vol.1, pp.239-257, 2009. ,
Cell wall structure and function in lactic acid bacteria, Microbial. Cell Factories, vol.13, p.9, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01204431
Genetic and biochemical characterization of the cell wall hydrolase activity of the major secreted protein of Lactobacillus rhamnosus GG, PLoS One, vol.7, p.31588, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-01189702
The impact of the gut microbiota on human health: an integrative view, Cell, vol.148, pp.1258-1270, 2012. ,
Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA, Proc. Natl. Acad. Sci. U.S.A, vol.69, pp.2110-2114, 1972. ,
Peptidoglycan structure analysis of Lactococcus lactis reveals the presence of an L,D-carboxypeptidase involved in peptidoglycan maturation, J. Bacteriol, vol.188, pp.5293-5298, 2006. ,
Peptidoglycan composition of a highly methicillin-resistant Staphylococcus aureus strain. The role of penicillin binding protein 2A, J. Biol. Chem, vol.267, pp.11248-11254, 1992. ,
Flow cytometric testing of green fluorescent protein-tagged Lactobacillus rhamnosus GG for response to defensins, Appl. Environ. Microbiol, vol.72, pp.4923-4930, 2006. ,
Peptidoglycan crosslinking relaxation plays an important role in Staphylococcus aureus WalKR-dependent cell viability, PLoS One, vol.6, p.17054, 2011. ,
A Fly on the wall: how stress response systems can sense and respond to damage to peptidoglycan. Front, Cell Infect Microbiol, vol.9, p.380, 2019. ,
Flavoring production in kamut R . quinoa and wheat doughs fermented by Lactobacillus paracasei, Lactobacillus plantarum, and Lactobacillus brevis: a SPME-GC/MS study, Front. Microbiol, vol.9, p.429, 2018. ,
High efficiency transformation of E. coli by high voltage electroporation, Nucleic Acids Res, vol.16, pp.6127-6145, 1988. ,
New insights into the WalK/WalR (YycG/YycF) essential signal transduction pathway reveal a major role in controlling cell wall metabolism and biofilm formation in Staphylococcus aureus, J. Bacteriol, vol.189, pp.8257-8269, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00189231
In vitro study of Lactobacillus paracasei CNCM I-1518 in healthy and Clostridium difficile colonized elderly gut microbiota, Front. Nutr, vol.6, p.184, 2019. ,
Knockout of the two ldh genes has a major impact on peptidoglycan precursor synthesis in Lactobacillus plantarum, J. Bacteriol, vol.178, pp.5431-5437, 1996. ,
How probiotics face food stress: they get by with a little help, Crit. Rev. Food Sci. Nutr, vol.18, pp.1-29, 2019. ,
How colonization by microbiota in early life shapes the immune system, Science, vol.352, pp.539-544, 2016. ,
Studies on the Epstein-Barr Virus Genome, 1984. ,
Nod2 is a general sensor of peptidoglycan through muramyl dipeptide (MDP) detection, J. Biol. Chem, vol.278, pp.8869-8872, 2003. ,
Separation and quantification of muropeptides with highperformance liquid chromatography, Anal. Biochem, vol.172, issue.88, p.90468, 1988. ,
Cloning, deletion, and characterization of PadR, the transcriptional repressor of the phenolic acid decarboxylase-encoding padA gene of Lactobacillus plantarum, 2004. ,
, Appl. Environ. Microbiol, vol.70, pp.2146-2153
Inactivation of PadR, the repressor of the phenolic acid stress response, by molecular interaction with Usp1, a universal stress protein from Lactobacillus plantarum, in Escherichia coli, Appl. Environ. Microbiol, vol.75, pp.5273-5283, 2009. ,
Vancomycin-resistant Leuconostoc mesenteroides and Lactobacillus casei synthesize cytoplasmic peptidoglycan precursors that terminate in lactate, J. Bacteriol, vol.176, pp.260-264, 1994. ,
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data, Genome Biol, vol.8, p.19, 2007. ,
Effect of human defensins on lactobacilli and liposomes, J. Appl. Microbiol, vol.113, pp.1491-1497, 2012. ,
The vancomycin resistance VanRS two-component signal transduction system of Streptomyces coelicolor, Mol. Microbiol, vol.59, pp.923-935, 2006. ,
Transposon mutagenesis of probiotic Lactobacillus casei identifies asnH, an asparagine synthetase gene involved in its immune-activating capacity, PLoS One, vol.9, p.83876, 2014. ,
Conserved S-Layer-associated proteins revealed by exoproteomic survey of S-Layer-forming lactobacilli, Appl. Environ. Microbiol, vol.82, pp.134-145, 2016. ,
Antimicrobial susceptibilities of Lactobacillus, Pediococcus and Lactococcus human isolates and cultures intended for probiotic or nutritional use, J. Antimicrob. Chemother, vol.59, pp.900-912, 2007. ,
From dietary fiber to host physiology: short-chain fatty acids as key bacterial metabolites, Cell, vol.165, pp.1332-1345, 2016. ,
Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG, J. Proteomics, vol.75, pp.1357-1374, 2012. ,
Diversity of Firmicutes peptidoglycan hydrolases and specificities of those involved in daughter cell separation, Res. Microbiol, vol.159, pp.507-515, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-01204247
The major secreted protein Msp1/p75 is O-glycosylated in Lactobacillus rhamnosus GG, Microb. Cell Fact, vol.11, p.15, 2012. ,
SMART: recent updates, new developments and status in 2015, Nucleic Acids Res, vol.43, 2014. ,
Development of an efficient in vivo system (Pjunc-TpaseIS1223) for random transposon mutagenesis of Lactobacillus casei, Appl. Environ. Microbiol, vol.78, pp.5417-5423, 2012. ,
Kinetics and intensity of the expression of genes involved in the stress response tightly induced by phenolic acids in Lactobacillus plantarum, J. Mol. Microbiol. Biotechnol, vol.14, pp.41-47, 2008. ,
Functional genomics of Lactobacillus casei establishment in the gut, Proc. Natl. Acad. Sci. U.S.A, vol.111, pp.3101-3109, 2014. ,
Diversity, stability and resilience of the human gut microbiota, Nature, vol.489, pp.220-230, 2012. ,
Identification of vancomycin-resistant lactic bacteria isolated from humans, J. Clin. Microbiol, vol.31, pp.2499-2501, 1993. ,
Comparative genomics of the lactic acid bacteria, Proc. Natl. Acad .Sci. U.S.A, vol.103, pp.15611-15616, 2006. ,
D-Alanylation of teichoic acids contributes to Lactobacillus plantarummediated Drosophila growth during chronic undernutrition, Nat. Microbiol, vol.2, pp.1635-1647, 2017. ,
Peptidoglycan N-acetylglucosamine deacetylation decreases autolysis in Lactococcus lactis, Microbiology, vol.153, pp.3275-3285, 2007. ,
The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota. Microbiol, Mol. Biol. Rev, vol.81, pp.36-53, 2017. ,
Different alleles of the response regulator gene bldM arrest Streptomyces coelicolor development at distinct stages, Mol. Microbiol, vol.36, pp.1265-1278, 2000. ,
URL : https://hal.archives-ouvertes.fr/hal-00314426
Adhesion properties of Lactobacillus casei strains to resected intestinal fragments and components of the extracellular matrix, Arch. Microbiol, vol.191, pp.153-161, 2009. ,
A continuum of anionic charge: structures and functions of D-alanyl-teichoic acids in gram-positive bacteria. Microbiol, Mol. Biol. Rev, vol.67, pp.686-723, 2003. ,
New genes involved in mild stress response identified by transposon mutagenesis, Front. Microbiol, vol.9, p.535, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01907759
D-alanyl ester depletion of teichoic acids in Lactobacillus plantarum results in a major modification of lipoteichoic acid composition and cell wall perforations at the septum mediated by the Acm2 autolysin, J. Bacteriol, vol.188, pp.3709-3715, 2006. ,
Functional analysis of D-alanylation of lipoteichoic acid in the probiotic strain Lactobacillus rhamnosus GG, Appl. Environ. Microbiol, vol.73, pp.3595-3604, 2007. ,
In Lactobacillus pentosus, the olive brine adaptation genes are required for biofilm formation, Int. J. Food Microbiol, vol.216, pp.104-109, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01498614
Use of resistant mutants to study the interaction of triton X-100 with Staphylococcus aureus, J. Bacteriol, vol.164, pp.1337-1349, 1985. ,
Analysis of the peptidoglycan hydrolase complement of Lactobacillus casei and characterization of the major gamma-D-glutamyl-Llysyl-endopeptidase, PLoS One, vol.7, 2012. ,
Analysis of ldh genes in Lactobacillus casei BL23: role on lactic acid production, J. Ind. Microbiol. Biotechnol, vol.35, pp.579-586, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00315470
O-glycosylation as a novel control mechanism of peptidoglycan hydrolase activity, J. Biol. Chem, vol.288, pp.22233-22247, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01204414
A qualified presumption of safety approach for the safety assessment of grana padano whey starters, Int. J. Food Microbiol, vol.130, pp.70-73, 2009. ,
Molecular Cloning: a Laboratory Manual, Cold Sring Harbor, 1989. ,
Rapid 96-well plates DNA extraction and sequencing procedures to identify genome-wide transposon insertion sites in a difficult to lyse bacterium: Lactobacillus casei, J. Microbiol. Methods, vol.106, pp.78-82, 2014. ,
The role of cell surface architecture of lactobacilli in host-microbe interactions in the gastrointestinal tract, Mediators Inflamm, p.237921, 2013. ,
Probiotics ameliorate the hydrogen peroxide-induced epithelial barrier disruption by a PKC-and MAP kinase-dependent mechanism, Am. J. Physiol. Gastrointest Liver Physiol, vol.294, pp.1060-1069, 2008. ,
The S-layer protein of Lactobacillus acidophilus ATCC 4356: identification and characterisation of domains responsible for S-protein assembly and cell wall binding, J. Mol. Biol, vol.305, pp.245-257, 2001. ,
The resilience of the intestinal microbiota influences health and disease, Nat. Rev. Microbiol, vol.15, pp.630-638, 2017. ,
Diet-microbiota interactions as moderators of human metabolism, Nature, vol.535, pp.56-64, 2016. ,
Autolysis of Lactococcus lactis is increased upon D-alanine depletion of peptidoglycan and lipoteichoic acids, J. Bacteriol, vol.187, pp.114-124, 2005. ,
Evaluation of the potential of Lactobacillus paracasei adjuncts for flavor compounds development and diversification in short-aged cheddar cheese, Front. Microbiol, vol.9, p.1506, 2018. ,
Two-component signal transduction, Annu. Rev. Biochem, vol.69, pp.183-215, 2000. ,
Pattern recognition receptors and inflammation, Cell, vol.140, pp.805-820, 2010. ,
, Structure, function and diversity of the healthy human microbiome, The Human Microbiome Project Consortium, vol.486, pp.207-214, 2012.
Mise en évidence des polysaccharides sur coupes fines en microscopie électronique, J. Microscopie, vol.6, pp.987-1018, 1967. ,
Stress responses in lactic acid bacteria, Antonie Van Leeuwenhoek, vol.82, pp.187-216, 2002. ,
Identification and H2O2 production of vaginal lactobacilli from pregnant women at high risk of preterm birth and relation with outcome, J. Clin. Microbiol, vol.42, pp.713-717, 2004. ,
Soluble proteins produced by probiotic bacteria regulate intestinal epithelial cell survival and growth, Gastroenterology, vol.132, pp.562-575, 2007. ,
, , 2013.
, A Lactobacillus rhamnosus GG-derived soluble protein, p40, stimulates ligand release from intestinal epithelial cells to transactivate epidermal growth factor receptor, J. Biol. Chem, vol.288, pp.30742-30751
Mechanisms of antimicrobial peptide action and resistance, Pharmacol. Rev, vol.55, pp.27-55, 2003. ,
Inhibition of Shigella sonnei adherence to HT-29 cells by lactobacilli from Chinese fermented food and preliminary characterization of S-layer protein involvement, Res. Microbiol, vol.161, pp.667-672, 2010. ,
Anticancer effects of the microbiome and its products, Nat. Rev. Microbiol, vol.15, pp.465-478, 2017. ,