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, As a result a substantial variation in stress responsive transcriptome under SD-and LD-stresses was observed. The number of DEGs was more in LD stresses over SD stresses. For instance, number of DEGs under LD-pathogen was 841 compared to 594 under SD-pathogen stress treatment. Similarly, LD-drought stress treatment, SD-combined and LD-combined stress transcripts (Figures 1D-F)
, LD-pathogen, LD-drought and LD-combined stress had 707, 1000, and 946 unique DEGs, respectively, as compared to 460, 778, and 709 unique DEGs in response to SD-pathogen, SDdrought and SD-combined stress, respectively. Moreover, very small percentages (10-15%) of genes were common between the respective SD and LD treatments (Figures 1D-F). The overlapping genes showed differential expression under different stresses. A few common genes between LD combined and LD drought stress (genes encoding for LEA5, E3 UBIQUI TIN-PROTEIN LIGASE, PP2C37, INOSITOL 3 PHOSPHATASE SYNTHASE LIKE, and MATE EFFULUX FAMILY PROTEIN 5) had higher expression in LD-combined stress as compared to LD-drought stress, DEGs under SD-combined stress. Each stress transcriptome had more number of unique DEGs and less number of common DEGs
, Color scale shows gene expression range where color bar in red and blue represents up-and down-regulated genes, respectively. Details of the genes shown in heat maps are available in Supplementary File S5. RESISTANCE 3, ZINC FINGER PROTEIN, DOF ZINC FINGER PROTEIN DOF1.1, SER/THR-PROTEIN KINASE EDR1, (STPKEDR1) RESPIRATORY BURST OXIDASE HOMOLOG B (RBOHB), TIR CLASS DISEASE RESISTANCE, and NITRATE REDUCTASE under SD-pathogen stress. LD-pathogen stress showed up-regulation of defense related genes encoding RETI CULIN OXIDASE LIKE PROTEIN, DISEASE RESISTANCERESPONSIVE (dirigent-like protein), GLUTAMINE AMIDO TRANSFERASE, PR, BOTRYTIS SUSCEPTIBLE 1, WRKY70, and RPP13. SD-combined stressed plants exhibited high upregulation of genes encoding RETICULIN OXIDASE LIKE PROTEIN (also called BERBERINE BRIDGE ENZYME), FIGURE 2 | Expression profile of DEGs common between combined and individual stresses. The DEGs with more than one fold expression and p < 0.05 under SD treatments (SD-pathogen, SD-drought, SD-combined stress) and LD treatments (LD-pathogen, LD-drought, 1991.
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