The quantity and distribution of the ciliate Protozoa in the large intestine of the horse, Parasitology, vol.22, issue.3-4, pp.301-311, 1950. ,
DOI : 10.2527/jas1944.33287x
In vivo Observations on the Ciliate Protozoa inhabiting the Large Intestine of the Horse, Journal of General Microbiology, vol.9, issue.3, pp.876-884, 1953. ,
DOI : 10.1099/00221287-9-3-376
The genetic diversity of lactic acid producing bacteria in the equine gastrointestinal tract, FEMS Microbiology Letters, vol.52, issue.1, pp.75-81, 2005. ,
DOI : 10.1099/ijs.0.01930-0
The characterization and nitrogen metabolism of equine caecal bacteria, 1983. ,
Fructooligosaccharide supplementation in the yearling horse: Effects on fecal pH, microbial content, and volatile fatty acid concentrations1,2, Journal of Animal Science, vol.33, issue.7, pp.1549-1553, 2005. ,
DOI : 10.2746/042516401776249534
The effect of transportation and probiotic administration on the microflora of horses using microbial community profiling and characterisation; a pilot study, Horse health nutrition: Third Europ, pp.83-89, 2006. ,
Attachement des Ciliés du caecum de cheval aux fragments végétaux -Dégradation des chloroplastes, 1985. ,
Analysis of the Virus Population Present in Equine Faeces Indicates the Presence of Hundreds of Uncharacterized Virus Genomes, Virus Genes, vol.9, issue.2, pp.151-156, 2004. ,
DOI : 10.1007/s11262-004-5624-3
Etude de la flore bactérienne du gros intestin de cheval, Ann. Inst. Pasteur, vol.25, pp.247-276, 1911. ,
Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene, PLoS ONE, vol.7, issue.7, p.41484, 2012. ,
DOI : 10.1371/journal.pone.0041484.t005
Comparative study of colon and faeces microbial communities and activities in horses fed a high starch diet, p.3, 2005. ,
Horse Nutr. Pferdeheilkunde, pp.45-46 ,
Design and evaluation of group-specific oligonucleotide probes for quantitative analysis of intestinal ecosystems: their application to assessment of equine colonic microflora, FEMS Microbiology Ecology, vol.65, issue.Suppl. 222, pp.243-252, 2003. ,
DOI : 10.1126/science.283.5402.686
Bacterial diversity within the equine large intestine as revealed by molecular analysis of cloned 16S rRNA genes, FEMS Microbiol. Ecol, vol.38, pp.141-151, 2001. ,
Alterations in microbiota and fermentation products in equine large intestine in response to dietary variation and intestinal disease, British Journal of Nutrition, vol.64, issue.07, pp.989-995, 2012. ,
DOI : 10.1017/S0007114510001030
Feeding and microbial disorders in horses: 1-effects of an abrupt incorporation of two levels of barley in a hay diet on microbial profile and activities, Journal of Equine Veterinary Science, vol.21, issue.9, pp.439-445, 2001. ,
DOI : 10.1016/S0737-0806(01)70018-4
Characterisation of the microbial and biochemical profile of the different segments of the digestive tract in horses fed two distinct diets, Anim. Sci, vol.77, pp.293-304, 2003. ,
The effect of exercise on microbial activity in the hindgut of horses, 2005. ,
A comparison of the microbiome and the metabolome of different regions of the equine hindgut, FEMS Microbiology Ecology, vol.24, issue.3, pp.1-11, 2012. ,
DOI : 10.1078/0723-2020-00060
Influence of flavomycin on ruminal fermentation and microbial populations in sheep, Microbiology, vol.151, issue.3, pp.717-725, 2005. ,
DOI : 10.1099/mic.0.27602-0
Molecular profiling of Lactobacillus, Streptococcus, and Bifidobacterium species in feces of active racehorses, The Journal of General and Applied Microbiology, vol.53, issue.3, pp.191-200, 2007. ,
DOI : 10.2323/jgam.53.191
Lactobacillus equigenerosi sp. nov., a coccoid species isolated from faeces of thoroughbred racehorses, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.67, issue.6, pp.914-918, 2008. ,
DOI : 10.1128/AEM.67.6.2578-2585.2001
Lactobacillus and Bifidobacterium Diversity in Horse Feces, Revealed by PCR-DGGE, Current Microbiology, vol.18, issue.2S, pp.651-655, 2009. ,
DOI : 10.1007/978-1-4471-3443-5_3
Comparison of colon and faeces microbial diversities in horses using molecular techniques. In: 6 th joint INRA- RRI gastrointestinal Tract Microbiol, Symp, 2006. ,
Contribution to the morphological, cytological, and ultrastructural characterization ofPiromyces mae, a strictly anaerobic rumen fungus, Current Microbiology, vol.236, issue.3, pp.159-164, 1992. ,
DOI : 10.1007/BF01568981
sp. nov., a strictly anaerobic fungus from the equine caecum: a morphological, metabolic, and ultrastructural study, FEMS Microbiology Letters, vol.18, issue.2-3, pp.321-326, 1995. ,
DOI : 10.1099/00221287-99-1-215
A comparative study of the intestinal microbiota of healthy horses and those suffering from equine grass sickness, Veterinary Microbiology, vol.87, issue.1, pp.81-88, 2002. ,
DOI : 10.1016/S0378-1135(02)00018-4
Long-term effects of endurance training on total tract apparent digestibility, total mean retention time and faecal microbial ecosystem in competing Arabian horses, Equine Veterinary Journal, vol.2, pp.387-392, 2010. ,
DOI : 10.3168/jds.S0022-0302(91)78551-2
Ultrastructural description of a new chytrid genus of caecum anaerobe, Caecomyces equi gen. nov., sp. nov., assigned to the Neocallimasticaceae, Biosystems, vol.21, issue.3-4, 1988. ,
DOI : 10.1016/0303-2647(88)90039-1
The Diversity of Coliphages and Coliforms in Horse Feces Reveals a Complex Pattern of Ecological Interactions, Applied and Environmental Microbiology, vol.73, issue.19, 2007. ,
DOI : 10.1128/AEM.01145-07
Effects of an abrupt diet change from hay to concentrate on microbial numbers and physical environment in the cecum of the pony, Appl. Environ. Microbiol, vol.54, pp.1946-1950, 1988. ,
Fecal microbiota of horses in the clinical setting: Potential effects of penicillin and general anesthesia, Veterinary Microbiology, vol.145, issue.3-4, pp.366-372, 2010. ,
DOI : 10.1016/j.vetmic.2010.03.023
Recherches sur des animalcules se développant en grand nombre dans l'estomac et dans les intestins, pendant la digestion des animaux herbivores et carnivores, Compt. Rend. Acad. Sci, vol.17, pp.1304-1308, 1843. ,
Intestinal ciliate composition found in the feces of the Cypriot wild donkey, Equus asinus Linnaeus, 1758. ,
Intestinal ciliate composition found in the feces of the Turk rahvan horse Equus caballus, 1758. ,
Intestinal ciliate composition found in the feces of racing horses from Izmir, Turkey, European Journal of Protistology, vol.48, issue.3, pp.215-226, 2012. ,
DOI : 10.1016/j.ejop.2012.01.002
Semi-quantitative analysis of Ruminococcus flavefaciens, Fibrobacter succinogenes and Streptococcus bovis in the equine large intestine using real-time polymerase chain reaction, British Journal of Nutrition, vol.15, issue.03, pp.561-568, 2008. ,
DOI : 10.1093/clinids/15.1.33
Digestion Coefficients, Blood Glucose Levels and Molar Percentage of Volatile Acids in Intestinal Fluid of Ponies Fed Varying Forage-Grain Ratios, Journal of Animal Science, vol.33, issue.5, pp.992-995, 1971. ,
DOI : 10.2527/jas1971.335992x
The anaerobic mesophilic cellulolytic bacteria, Bacteriol. Rev, vol.14, pp.1-46, 1950. ,
Compositon of intestinal ciliates and bacteria excreted in feces of the race-horse, Jpn. J. Vet. Sci, vol.40, pp.157-163, 1983. ,
Establishment of intestinal ciliates in new-born horses., The Japanese Journal of Veterinary Science, vol.47, issue.1, pp.39-43, 1985. ,
DOI : 10.1292/jvms1939.47.39
Intestinal ciliate composition found in the feces of japanese native kiso horse, Bull. Nippon Vet. Anim. Sci. Univ, vol.48, pp.33-38, 1999. ,
High fat intake by ponies reduces both apparent digestibility of dietary cellulose and cellulose fermentation by faeces and isolated caecal and colonic contents, Animal Feed Science and Technology, vol.133, issue.3-4, pp.298-308, 2007. ,
DOI : 10.1016/j.anifeedsci.2006.05.002
Effect of live yeast culture supplementation on hindgut microbial communities and their polysaccharidase and glycoside hydrolase activities in horses fed a high-fiber or high-starch diet, Journal of Animal Science, vol.87, issue.9, pp.2844-2852, 2009. ,
DOI : 10.2527/jas.2008-1602
Impact of nutrition on the gastro-intestinal tract in horses, 1 st Equine Nutr. Conf, pp.85-103, 2005. ,
Comparison of metabolic activities between Piromyces citronii, an equine fungal species, and Piromyces communis, a ruminal species, Animal Feed Science and Technology, vol.70, issue.1-2, pp.161-168, 1998. ,
DOI : 10.1016/S0377-8401(97)00043-6
Identification of ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum, Appl. Environ. Microbiol, vol.65, pp.3738-3741, 1999. ,
Feeding and microbial disorders in horses: Part 3???Effects of three hay:grain ratios on microbial profile and activities, Journal of Equine Veterinary Science, vol.21, issue.11, 2001. ,
DOI : 10.1016/S0737-0806(01)70159-1
Pony Cecum vs. Steer Rumen: The Effect of Oats and Hay on the Microbial Ecosystem, Journal of Animal Science, vol.37, issue.2, pp.463-469, 1973. ,
DOI : 10.2527/jas1973.372463x
Ponies vs. Steers: Microbial and Chemical Characteristics of Intestinal Ingesta1, Journal of Animal Science, vol.38, issue.3, pp.559-564, 1974. ,
DOI : 10.2527/jas1974.383559x
Estimation of ruminal bacteriophage numbers by pulsedfield gel electrophoresis and laser densitometry, Appl. Environ. Microbiol, vol.59, pp.2299-2303, 1993. ,
Hindgut microbes, fermentation and their seasonal variations in Hokkaido native horses compared to light horses, Ecological Research, vol.11, issue.2, pp.285-291, 2006. ,
DOI : 10.2527/jas1974.383559x
Fecal Bacteria in Hokkaido Native Horses as Characterized by Microscopic Enumeration and Competitive Polymerase Chain Reaction Assays., Journal of Equine Science, vol.11, issue.2, pp.45-50, 2000. ,
DOI : 10.1294/jes.11.45
Diversity and dynamics of bacteriophages in horse feces, Microbiology, vol.38, issue.12, pp.236-242, 2007. ,
DOI : 10.1111/j.1365-2672.1986.tb01081.x
Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing, Environmental Microbiology, vol.41, issue.4, pp.530-543, 2005. ,
DOI : 10.1128/AEM.67.4.1565-1574.2001
The bacteriophages in human- and animal body-associated microbial communities, Journal of Applied Microbiology, vol.4, issue.1, pp.1-13, 2009. ,
DOI : 10.1016/S1383-5718(00)00003-6
Chytridiomycetous gut fungi, oft overlooked contributors to herbivore digestion, Canadian Journal of Microbiology, vol.39, issue.11, pp.1003-1013, 1993. ,
DOI : 10.1139/m93-153
Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores, The ISME Journal, vol.55, issue.10, pp.1225-1235, 2010. ,
DOI : 10.1038/ismej.2008.106
Taxon-specific probes for the cellulolytic genus Fibrobacter reveal abundant and novel equine-associated populations, Appl. Environ. Microbiol, vol.61, pp.1348-1351, 1995. ,
Phylogenetic analysis of Methanobrevibacter isolated from feces of humans and other animals, Archives of Microbiology, vol.169, issue.5, pp.397-403, 1998. ,
DOI : 10.1007/s002030050589
Enumeration of anaerobic bacterial microflora of the equine gastrointestinal tract, Appl. Environ. Microbiol, vol.54, pp.2155-2160, 1988. ,
Nitrogen utilization in bacterial isolates from the equine cecum, Appl. Environ. Microbiol, vol.50, pp.1439-1443, 1985. ,
Microflora in the equine cecum, J. Anim. Sci, vol.33, p.234, 1971. ,
Effect of a preparation of Saccharomyces cerevisiae on microbial profiles and fermentation patterns in the large intestine of horses fed a high fiber or a high starch diet1, Journal of Animal Science, vol.45, issue.Suppl 1, 2002. ,
DOI : 10.2527/jas1977.45187x
Changes in equine hindgut bacterial populations during oligofructose-induced laminitis, Environmental Microbiology, vol.18, issue.5, pp.885-898, 2006. ,
DOI : 10.1111/j.1439-0442.2004.00684.x
Fluorescence in situ hybridization analysis of hindgut bacteria associated with the development of equine laminitis, Environmental Microbiology, vol.19, issue.8, pp.2090-2100, 2007. ,
DOI : 10.1111/j.1439-0442.2004.00684.x
Streptococcus henryi sp. nov. and Streptococcus caballi sp. nov., isolated from the hindgut of horses with oligofructose-induced laminitis, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.58, issue.1, 2008. ,
DOI : 10.1099/ijs.0.65063-0
Microbial ecology of the equine hindgut during oligofructose-induced laminitis, Int. J. Syst. Evol. Microbiol, vol.2, pp.1089-1100, 2008. ,
Methanogens in human and animal intestinal Tracts, Systematic and Applied Microbiology, vol.7, issue.2-3, 1986. ,
DOI : 10.1016/S0723-2020(86)80010-8
Isolation and characterization of methanogens from animal feces, Systematic and Applied Microbiology, vol.8, issue.3, pp.234-238, 1986. ,
DOI : 10.1016/S0723-2020(86)80084-4
Effects of diet and hindgut defaunation on diet digestibility and microbial concentrations in the cecum and colon of the horse, Journal of Animal Science, vol.71, issue.12, pp.3350-3358, 1993. ,
DOI : 10.2527/1993.71123350x
Lactobacillus equi sp. nov., a predominant intestinal Lactobacillus species of the horse isolated from faeces of healthy horses., International Journal of Systematic and Evolutionary Microbiology, vol.52, issue.1, 2002. ,
DOI : 10.1099/00207713-52-1-211
Quantitative Determination of H 2 -Utilizing Acetogenic and Sulfate-Reducing Bacteria and Methanogenic Archaea from Digestive Tract of Different Mammals, Current Microbiology, vol.32, issue.3, pp.129-133, 1996. ,
DOI : 10.1007/s002849900023
Effects of crude protein intake from grass silage-only diets on the equine colon ecosystem after an abrupt feed change1, Journal of Animal Science, vol.56, issue.12, pp.3465-3472, 2008. ,
DOI : 10.1017/S0021859600063061
Effects on the equine colon ecosystem of grass silage and haylage diets after an abrupt change from hay, 2009. ,
Effect of forage conservation method on microbial flora and fermentation pattern in forage and in equine colon and faeces, Livestock Science, vol.119, issue.1-3, 2008. ,
DOI : 10.1016/j.livsci.2008.03.007
Isolation of Cellulolytic Phycomycete Fungi from the Caecum of the Horse, Microbiology, vol.123, issue.2, 1981. ,
DOI : 10.1099/00221287-123-2-287
On the distribution of the ciliated protozoa in the large intestine of horse, Tohoku J. Agric. Res, vol.24, pp.86-101, 1973. ,
Marine microbial diversity: can it be determined? Trends in Microbiol, pp.257-263, 2006. ,
Feeding value of grass molasses pellets and their influence on the faecal microbiota of horses, Ann. Agric. Fenn, vol.17, pp.109-114, 1978. ,
Is there an impact of feeding concentrate before or after forage on colonic pH and redox potential in horses? In: Applied equine nutrition and training, Equine Nutr. Training Conf. (ENUTRACO), pp.203-208, 2009. ,
Effects of short-chain fructo-oligosaccharides on the microbial and biochemical profile of different segments of the gastro-intestinal tract in horses, Pferdeheilkunde Equine Medicine, vol.23, issue.2, pp.146-150, 2007. ,
DOI : 10.21836/PEM20070206
Effects of dietary short-chain fructooligosaccharides on the intestinal microflora of horses subjected to a sudden change in diet, Journal of Animal Science, vol.82, issue.2, 2008. ,
DOI : 10.1093/ps/82.6.1030
PCR-DGGE analysis reveals a distinct diversity in the bacterial
population attached to the rumen epithelium, animal, vol.59, issue.07, pp.939-944, 2007. ,
DOI : 10.1038/279424a0
URL : https://hal.archives-ouvertes.fr/hal-01772671
Temporal stability of bacterial community structure from equine feces, Conf. Gastro- Intestinal Function, 2011. ,
Gut Microbiota in Health and Disease, Physiological Reviews, vol.123, issue.3, pp.859-904, 2010. ,
DOI : 10.1128/AEM.68.7.3401-3407.2002
Characterization of the fecal bacterial population in an obese and non-obese horse fed variable carbohydrate hay by use of pyrosequencing: a pilot study, AAVN Clinical Nutr. Res. Symp, pp.808-816, 2011. ,
Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons, FEMS Microbiology Letters, vol.74, issue.1, pp.62-68, 2012. ,
DOI : 10.1128/AEM.00684-07
Characterization of Fecal Bacterial Populations in Canines: Effects of Age, Breed and Dietary Fiber, Microbial Ecology, vol.44, issue.2, pp.186-197, 2002. ,
DOI : 10.1007/s00248-002-0001-z
Rumen Bacterial Community Transition During Adaptation to High-grain Diet, Anaerobe, vol.6, issue.5, pp.273-284, 2000. ,
DOI : 10.1006/anae.2000.0353
Effets de différents régimes sur l'activité biochimique dans le gros intestin du poney In: 27 ème Réunion annuelle de la F, E.Z. Féd. Europ. Zootech, pp.380-390, 1976. ,
Etude sur la morphologie, le cycle évolutif et la composition systématique de Callimastix cyclopis, Protistol, vol.2, pp.5-16, 1966. ,
Diet related changes in the gastrointestinal microbiota of horses, Swedish University of Agricultural Sciences, p.36, 2008. ,
Phylogenetic Analysis of Rumen Bacteria by Comparative Sequence Analysis of Cloned 16S rRNA Genes??, Anaerobe, vol.4, issue.3, 1998. ,
DOI : 10.1006/anae.1998.0155
Changes in faecal bacteria associated with concentrate and forage-only diets fed to horses in training, Equine Veterinary Journal, vol.66, issue.9, 2009. ,
DOI : 10.1099/00207713-52-1-211
Digestibilit?? et activit?? biochimique intrac??cale chez le poney recevant un m??me aliment complet pr??sent?? sous forme granul??e, expans??e ou semi-expans??e, Annales de Zootechnie, vol.27, issue.1, pp.expansée ou semi-expansée, 1978. ,
DOI : 10.1051/animres:19780105
Phylogenetic analysis of hindgut microbiota in Hokkaido native horses compared to light horses, Animal Science Journal, vol.64, issue.2, pp.234-242, 2008. ,
DOI : 10.1006/anae.1998.0155
Improved serial analysis of V1 ribosomal sequence tags (SARST-V1) provides a rapid, comprehensive, sequence-based characterization of bacterial diversity and community composition, Environmental Microbiology, vol.50, issue.4, pp.603-611, 2006. ,
DOI : 10.1128/AEM.70.8.4800-4806.2004
Evaluation of a hostspecific lactobacillus probiotic in training-horses and neonatal foals, J. Intest. Microbiol, vol.18, pp.101-106, 2004. ,
Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria, Appl. Environ. Microbiol, vol.64, pp.3854-3859, 1998. ,
Molecular Ecological Analysis of the Gastrointestinal Microbiota: A Review, The Journal of Nutrition, vol.69, issue.2, pp.465-472, 2004. ,
DOI : 10.1128/AEM.69.5.2942-2949.2003